miRNEST 2.0, an integrative microRNA resource

ABOUT THIS RECORD

ID: MNEST039603
species: Physcomitrella patens
miRNA family: MIR1030
source: miRBase, original name: ppt-MIR1030i (MI0005983)

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

pre-miRNA
AATTCTCCTCTTCATCGCTGTAATGCCATGTTCCTGCATCTGCACCTGCACCGCACTGCCTCACGAGAATGTGCACGAATGGATCAGAGCGGTGTTGTGC
AAATCCTGCTTTCAGTCAATCACTGAGCTTGAGTTTTAGCAATTCTTATTTCCTCTGAACTTTCTTCTGGCATTATAGTGGTGGAGGTGCTTATGCAGAA
ATATTGCATTGCGGCTGAGAGCCACTAATG

dot-bracket secondary structure
.......((((.((..((((((((((.(((((.((((((..((((((.((((((..((((....(((((.((.((.((..(((...((((((..((....
.))..))))))(((((.....)))))(((........)))..........))))))).)).)))))..)))).....)))))).))))))..)))))).)
)))).)))))))))))))))).........

SIMILARITIES

miRBase ppt-MIR1030j: 6e-29

PMRD ppt-miR1030i: 4e-129

microPC no hits

UniProt no hits

RFAM no hits

Identical with: ppt-miR1030i from PMRD (MNEST051466)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"