ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1031
source: miRBase, original name: ppt-MIR1031b (MI0005986)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAATGCTCTCTGGAGCTTCT miRNA* AAGCTTCATAGGACATTGACT mismatches: 3 bulges: 0 |
pre-miRNA
ACGGCGGAAGTTCTGGATCACAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGCCGTTGCTTTGGGGAGTGTGGGTTTGTCCCCCTGGACAGGTCTGCAG
AACCTGACGGCCTTGGCCCTGATCTGCATCCCTCTCTTAATTGAACCTCAGAAGCTTCATAGGACATTGACTTGATTTGTGACCCTGTGATGAAGAAA
dot-bracket secondary structure
..(((....)))..((.(((((((((...((((((..((.(((((((((((.((((..((((..((...((..(..((((((....))))))..)..)).
..))..).)))..)))).................((......))....))))))))))).))..))))))...))))))))).)).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
ACGGCGGAAGTTCTGGATCACAAATTTGCTCAATGCTCTCTGGAGCTTCTGTGCCGTTGCTTTGGGGAGTGTGGGTTTGTCCCCCTGGACAGGTCTGCAG
AACCTGACGGCCTTGGCCCTGATCTGCATCCCTCTCTTAATTGAACCTCAGAAGCTTCATAGGACATTGACTTGATTTGTGACCCTGTGATGAAGAAA
dot-bracket secondary structure
..(((....)))..((.(((((((((...((((((..((.(((((((((((.((((..((((..((...((..(..((((((....))))))..)..)).
..))..).)))..)))).................((......))....))))))))))).))..))))))...))))))))).)).............
SIMILARITIES| miRBase ppt-MIR1031a: 7e-16 PMRD ppt-miR1031b: 4e-110 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-miR1031b from PMRD (MNEST051469) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
