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ABOUT THIS RECORD

ID: MNEST039609
species: Physcomitrella patens
miRNA family: MIR1033
source: miRBase, original name: ppt-MIR1033b (MI0005989)

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACGGGTCGTGATGGGCACT

miRNA*
TGCTCAACACGATCTGTCAAC

mismatches: 3
bulges: 0

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pre-miRNA
GTGACCAAGATGGAGATGATGGGATGTTGGGCATGCTCAACACGATCTGTCAACATTCTAGAGTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCA
CTTCATGGTTTTGTGACGT


dot-bracket secondary structure
((.((.(((((....((((..((((((((((..((((((.(((((((((((((.((........)).))))))))))))).))))))..)))))))))).
..)))).))))))).))..



SIMILARITIES
miRBase ppt-MIR1033c: 3e-38

PMRD ppt-miR1033b: 3e-63

microPC miR1033: 1e-25
UniProt no hits

RFAM no hits

Identical with: ppt-miR1033b from PMRD (MNEST051472)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence

references

[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"




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