ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1033
source: miRBase, original name: ppt-MIR1033e (MI0005992)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACGGGTCGTGATGGGCACT miRNA* TGTCCAGCACAACCTGTCAAC mismatches: 3 bulges: 0 |
pre-miRNA
GACTAAGATAACATTCGGCAGGGGTGTTGGGAATGTCCAGCACAACCTGTCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTCCC
ATGCCCAAACTGCACATCA
dot-bracket secondary structure
................(((((((..(((((((.((((((.(((.((((((((((((........)))))))))))).))).)))))).)))))))..)))
.))))..............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GACTAAGATAACATTCGGCAGGGGTGTTGGGAATGTCCAGCACAACCTGTCAACATTCCAGGTTATGTTGACGGGTCGTGATGGGCACTCTCAGCGTCCC
ATGCCCAAACTGCACATCA
dot-bracket secondary structure
................(((((((..(((((((.((((((.(((.((((((((((((........)))))))))))).))).)))))).)))))))..)))
.))))..............
SIMILARITIES| miRBase ppt-MIR1033a: 5e-31 PMRD ppt-miR1033e: 3e-63 microPC miR1033: 0.00000002 | UniProt no hits RFAM no hits |
Identical with: ppt-miR1033e from PMRD (MNEST051475) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
