ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR2083
source: miRBase, original name: ppt-MIR2083 (MI0010537)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCTTGCACTCCTCCATCTCT miRNA* AGATTGACGAGTGCAAGAAGA mismatches: 2 bulges: 0 |
pre-miRNA
AAAAGTGTGTGTATGCGGAAGTTGGAGAAAACCCAGACTTCATTGCTCGATGAAGCATGTAGCTTCGCAGTCGTACTTCTTGCACTCCTCCATCTCTCGC
ATCTCTTGCGCATTGTGGTTCTCCAACACCTGCACAGCGGCGGTCTTGTCCGGATTAGGGATCGTCTACACCAGATAAGCCACGGCGTTTTTCTCGGAGA
AAAATACCATCCTTTGGTTCAACAACGGTTGCTGCGTTTTCCACGTTCGGATACAACCCTGCCCAGTTGCTGTGAGAGATTGACGAGTGCAAGAAGACCC
TCTTTCCATGTTCCAGACGCA
dot-bracket secondary structure
....((((.((((((.(((((..((.(((....((..(((((((....)))))))..))....))).........((((((((((((.((.(((((((((
(.(..(((.(((.(((((....)).)))..)))...((((.(((..(((((((((...(((.((.......(((...((((..((..((((((.....))
))))..)).....(((......))).)))).)))))...)))..)))))))))..))))))).)))..).)))))))))).)).)))))))))))).)).
.)))))))))...)).)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ, PLoS Genet. 4:e1000314(2008)., "Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development"
AAAAGTGTGTGTATGCGGAAGTTGGAGAAAACCCAGACTTCATTGCTCGATGAAGCATGTAGCTTCGCAGTCGTACTTCTTGCACTCCTCCATCTCTCGC
ATCTCTTGCGCATTGTGGTTCTCCAACACCTGCACAGCGGCGGTCTTGTCCGGATTAGGGATCGTCTACACCAGATAAGCCACGGCGTTTTTCTCGGAGA
AAAATACCATCCTTTGGTTCAACAACGGTTGCTGCGTTTTCCACGTTCGGATACAACCCTGCCCAGTTGCTGTGAGAGATTGACGAGTGCAAGAAGACCC
TCTTTCCATGTTCCAGACGCA
dot-bracket secondary structure
....((((.((((((.(((((..((.(((....((..(((((((....)))))))..))....))).........((((((((((((.((.(((((((((
(.(..(((.(((.(((((....)).)))..)))...((((.(((..(((((((((...(((.((.......(((...((((..((..((((((.....))
))))..)).....(((......))).)))).)))))...)))..)))))))))..))))))).)))..).)))))))))).)).)))))))))))).)).
.)))))))))...)).)))).
SIMILARITIES| miRBase no hits PMRD ppt-miR899: 3e-75 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ, PLoS Genet. 4:e1000314(2008)., "Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development"
