ABOUT THIS RECORDspecies: Selaginella moellendorffii
miRNA family: MIR166
source: miRBase, original name: smo-MIR166c (MI0006055)
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAGTGCTGCCTGGCTCGAGA mismatches: 4 bulges: 0 |
pre-miRNA
TATGTTGCGGGGAGTGCTGCCTGGCTCGAGACAGCATCGCCGAGATCTGATCAAATCGCAAAGTTGAGAAACAAGCATCACAGTTTGATCTGGAGATCGT
GTTGTGTCGGACCAGGCTTCATTCCCCTCAGCTACAAA
dot-bracket secondary structure
...((((.((((((((..((((((..(((.((((((....(((..(((((((((((.(....(((........)))....).)))))))).)))..))))
))))).)))..))))))..)))))))).))))......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
TATGTTGCGGGGAGTGCTGCCTGGCTCGAGACAGCATCGCCGAGATCTGATCAAATCGCAAAGTTGAGAAACAAGCATCACAGTTTGATCTGGAGATCGT
GTTGTGTCGGACCAGGCTTCATTCCCCTCAGCTACAAA
dot-bracket secondary structure
...((((.((((((((..((((((..(((.((((((....(((..(((((((((((.(....(((........)))....).)))))))).)))..))))
))))).)))..))))))..)))))))).))))......
SIMILARITIES| miRBase ppt-MIR166f: 0.00000003 PMRD smo-miR166c: 2e-74 microPC miR166: 5e-62 | UniProt no hits RFAM mir-166: 0.000002 |
Identical with: smo-miR166c from PMRD (MNEST054578) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
