ABOUT THIS RECORDspecies: Selaginella moellendorffii
miRNA family: MIR536
source: miRBase, original name: smo-MIR536 (MI0006062)
SEQUENCE & STRUCTURE| miRNA TCGTGTCAAGCTGTGTGCATC miRNA* TGCACTCAGCTTGACACGGCC mismatches: 1 bulges: 0 |
pre-miRNA
GTGTTTTTGATGCACTCAGCTTGACACGGCCGTGCTTGGAAGTCTGGAAAGTTTTCTTTCACGCTCCACTGATGCTGCTGCTGCAATGCGTGCTGACTCT
CTCTCTCTCTCTTGGTCGTGTCAAGCTGTGTGCATCACAACGCATTGCTCGTTTTCA
dot-bracket secondary structure
(((((..((((((((.((((((((((((((((....((((.((...(((((....)))))..))))))...(((((((....)))..)))).........
............)))))))))))))))).)))))))).)))))..............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GTGTTTTTGATGCACTCAGCTTGACACGGCCGTGCTTGGAAGTCTGGAAAGTTTTCTTTCACGCTCCACTGATGCTGCTGCTGCAATGCGTGCTGACTCT
CTCTCTCTCTCTTGGTCGTGTCAAGCTGTGTGCATCACAACGCATTGCTCGTTTTCA
dot-bracket secondary structure
(((((..((((((((.((((((((((((((((....((((.((...(((((....)))))..))))))...(((((((....)))..)))).........
............)))))))))))))))).)))))))).)))))..............
SIMILARITIES| miRBase no hits PMRD smo-miR536: 4e-57 microPC miR536: 2e-43 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
