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ABOUT THIS RECORD

ID: MNEST039824
species: Arabidopsis lyrata
miRNA family: MIR166
source: miRBase, original name: aly-MIR166d (MI0014535)







SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC

miRNA*
GGAATGTTGTCTGGCTCGAGG

mismatches: 5
bulges: 0

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pre-miRNA
GGTTGAGAGGAATGTTGTCTGGCTCGAGGTCATGAAGAAGATCATTAGATTGATTCATCTTAAAGAATGAAAACCCTAAATGATTCTCGGACCAGGCTTC
ATTCCCC
CCAACC


dot-bracket secondary structure
(((((.(.((((((..((((((..(((((((((..((..((((....))))..((((((.....).)))))....))..)))).)))))..))))))..)
))))).)
.)))))



SIMILARITIES
miRBase ath-MIR166d: 2e-45

PMRD ath-miR166d: 2e-45

microPC miR166: 0.000000006
UniProt no hits

RFAM mir-166: 6e-43

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLiD

references

[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
[2] Ma Z, Coruh C, Axtell MJ, Plant Cell. 22:1090-1103(2010)., "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"




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