ABOUT THIS RECORDspecies: Arabidopsis lyrata
miRNA family: MIR166
source: miRBase, original name: aly-MIR166f (MI0014537)
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* TGAATGATGCCTGGCTCGAGA mismatches: 4 bulges: 0 |
pre-miRNA
AAGTTCAGGTGAATGATGCCTGGCTCGAGACCATTCCATCTCATGATCATGATGATGATATAATGATGATGATGATGTCGGACCAGGCTTCATTCCCCTC
AACTT
dot-bracket secondary structure
(((((.(((.((((((.((((((..(((.(.(((..((((((((.(((((....)))))...)))).))))))).).)))..)))))).)))))).))).
)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLiD
references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
[2] Ma Z, Coruh C, Axtell MJ, Plant Cell. 22:1090-1103(2010)., "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"
AAGTTCAGGTGAATGATGCCTGGCTCGAGACCATTCCATCTCATGATCATGATGATGATATAATGATGATGATGATGTCGGACCAGGCTTCATTCCCCTC
AACTT
dot-bracket secondary structure
(((((.(((.((((((.((((((..(((.(.(((..((((((((.(((((....)))))...)))).))))))).).)))..)))))).)))))).))).
)))))
SIMILARITIES| miRBase ath-MIR166f: 0.000000000000006 PMRD ath-miR166f: 0.000000000000006 microPC miR166: 0.00002 | UniProt no hits RFAM mir-166: 0.000000000002 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLiD
references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
[2] Ma Z, Coruh C, Axtell MJ, Plant Cell. 22:1090-1103(2010)., "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"
