ABOUT THIS RECORDspecies: Arabidopsis lyrata
miRNA family: MIR167
source: miRBase, original name: aly-MIR167a (MI0014539)
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGTTCGCAGTTTCACC mismatches: 1 bulges: 0 |
pre-miRNA
GGTGCACCGGCATCTGATGAAGCTGCCAGCATGATCTAATTAGCTTTCTTTATATCTGTTGTTGTGTTTCATAACGATGGTTAAGAGATGAGTCTCGATT
AGATCATGTTCGCAGTTTCACCCGTTGACTGTCGCACC
dot-bracket secondary structure
(((((..(((((.(.(.(((((((((.((((((((((((((((((((((((.((.(((((((((((...))))))))))).))))))).))).)).))))
)))))))))).))))))))).).).)).)))..)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLiD
references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
[2] Ma Z, Coruh C, Axtell MJ, Plant Cell. 22:1090-1103(2010)., "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"
GGTGCACCGGCATCTGATGAAGCTGCCAGCATGATCTAATTAGCTTTCTTTATATCTGTTGTTGTGTTTCATAACGATGGTTAAGAGATGAGTCTCGATT
AGATCATGTTCGCAGTTTCACCCGTTGACTGTCGCACC
dot-bracket secondary structure
(((((..(((((.(.(.(((((((((.((((((((((((((((((((((((.((.(((((((((((...))))))))))).))))))).))).)).))))
)))))))))).))))))))).).).)).)))..)))))
SIMILARITIES| miRBase ath-MIR167a: 2e-58 PMRD ath-miR167a: 2e-58 microPC miR167: 2e-37 | UniProt no hits RFAM MIR167_1: 4e-51 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLiD
references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
[2] Ma Z, Coruh C, Axtell MJ, Plant Cell. 22:1090-1103(2010)., "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"
