ABOUT THIS RECORDspecies: Arabidopsis lyrata
miRNA family: MIR167
source: miRBase, original name: aly-MIR167b (MI0014540)
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GGTCATGCTCTGACAGCCTCACT mismatches: 2 bulges: 2 |
pre-miRNA
ATCTGCACAACTTGTTGCTCAGGTATTTTGAAGACAAGTCCACAAGGGAACAAGTGAAGCTGCCAGCATGATCTATCTTTGGTTAAGAGATGAATGTGTA
AACATATTGCTTAAACCCAAGCTAGGTCATGCTCTGACAGCCTCACTCCTTCCTGGTTTAGGACCATTCACTGATAAAGCATTCCACATGCCGAT
dot-bracket secondary structure
(((.(((........((((....((((.((((.....((((....(((((..(((((.(((((.(((((((((((.(((.((((..(((...((((((..
..)))))).))).)))).))).)))))))))))..).)))).)))))..)))))......))))..))))..)))).)))).......))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLiD
references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
[2] Ma Z, Coruh C, Axtell MJ, Plant Cell. 22:1090-1103(2010)., "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"
ATCTGCACAACTTGTTGCTCAGGTATTTTGAAGACAAGTCCACAAGGGAACAAGTGAAGCTGCCAGCATGATCTATCTTTGGTTAAGAGATGAATGTGTA
AACATATTGCTTAAACCCAAGCTAGGTCATGCTCTGACAGCCTCACTCCTTCCTGGTTTAGGACCATTCACTGATAAAGCATTCCACATGCCGAT
dot-bracket secondary structure
(((.(((........((((....((((.((((.....((((....(((((..(((((.(((((.(((((((((((.(((.((((..(((...((((((..
..)))))).))).)))).))).)))))))))))..).)))).)))))..)))))......))))..))))..)))).)))).......))).)))
SIMILARITIES| miRBase ath-MIR167b: 1e-54 PMRD ath-miR167b: 1e-54 microPC miR167: 0.00000004 | UniProt no hits RFAM MIR167_1: 1e-57 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLiD
references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
[2] Ma Z, Coruh C, Axtell MJ, Plant Cell. 22:1090-1103(2010)., "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"
