ABOUT THIS RECORDspecies: Arabidopsis lyrata
miRNA family: MIR169
source: miRBase, original name: aly-MIR169b (MI0014546)
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTTGTCCTTCGGCTACA mismatches: 3 bulges: 1 |
pre-miRNA
GTGCCCAACGGAGTAGAATTGCATGAAGTGGAGTAGAGTATAATGCAGCCAAGGATGACTTGCCGGAACGTTGTTAATCATACGTATAAATTATGTGATG
AACATATTTCTGGCAAGTTGTCCTTCGGCTACATTTTGCTCTCTTCTTCTCATGCAAACTCTCTTTGGGATAT
dot-bracket secondary structure
...(((((.((((.((..((((((((...((((.((((((.((((.(((((((((..(((((((((((...((((.(((..(((((.....)))))))).
))))...)))))))))))..))))).)))).)))).))))))))))...)))))))).)))))))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLiD
references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
[2] Ma Z, Coruh C, Axtell MJ, Plant Cell. 22:1090-1103(2010)., "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"
GTGCCCAACGGAGTAGAATTGCATGAAGTGGAGTAGAGTATAATGCAGCCAAGGATGACTTGCCGGAACGTTGTTAATCATACGTATAAATTATGTGATG
AACATATTTCTGGCAAGTTGTCCTTCGGCTACATTTTGCTCTCTTCTTCTCATGCAAACTCTCTTTGGGATAT
dot-bracket secondary structure
...(((((.((((.((..((((((((...((((.((((((.((((.(((((((((..(((((((((((...((((.(((..(((((.....)))))))).
))))...)))))))))))..))))).)))).)))).))))))))))...)))))))).)))))))))))....
SIMILARITIES| miRBase ath-MIR169b: 6e-56 PMRD ath-miR169b: 6e-56 microPC miR169: 0.00003 | UniProt no hits RFAM MIR169_2: 5e-26 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLiD
references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
[2] Ma Z, Coruh C, Axtell MJ, Plant Cell. 22:1090-1103(2010)., "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"
