ABOUT THIS RECORDspecies: Arabidopsis lyrata
miRNA family: MIR169
source: miRBase, original name: aly-MIR169c (MI0014547)
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTCATCTCTGGCTATG mismatches: 3 bulges: 0 |
pre-miRNA
GTCTCATCTAAAGCCTTGAATGTGGGAAAAAGGCCATTGTTGTTCAGCCAAGGATGACTTGCCGGTAGCTTTGTATATTTACTCTATATTCGGTTTATAT
TATGGAGATTATGCTTTATATATATATATACATAGTTTTAATTGATTTTTTTTCGTACGTACGTAATCTAATACGAAAAAGTATTTACTTATTTATATGT
GTGTTGGTGAGATGTGTAAACAAAGCAAGCCCGGCAAGTCATCTCTGGCTATGCAACTGCCTCTTCCTCTCATTCTAGGCTTACGATGACAC
dot-bracket secondary structure
((.(((((..((((((.(((((.(((((..((((....(((((..(((((..(((((((((((((..(((((((.......(((((((............
)))))))..(((((.((.(((....(((((((((....(((.(((..((((((((((..............))))))))))...))).)))....)))))
))))..))).)).))))).)))))))....)))))))))))))..)))))..))))).)))).)))))..))))).))))))..))))).))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLiD
references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
[2] Ma Z, Coruh C, Axtell MJ, Plant Cell. 22:1090-1103(2010)., "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"
GTCTCATCTAAAGCCTTGAATGTGGGAAAAAGGCCATTGTTGTTCAGCCAAGGATGACTTGCCGGTAGCTTTGTATATTTACTCTATATTCGGTTTATAT
TATGGAGATTATGCTTTATATATATATATACATAGTTTTAATTGATTTTTTTTCGTACGTACGTAATCTAATACGAAAAAGTATTTACTTATTTATATGT
GTGTTGGTGAGATGTGTAAACAAAGCAAGCCCGGCAAGTCATCTCTGGCTATGCAACTGCCTCTTCCTCTCATTCTAGGCTTACGATGACAC
dot-bracket secondary structure
((.(((((..((((((.(((((.(((((..((((....(((((..(((((..(((((((((((((..(((((((.......(((((((............
)))))))..(((((.((.(((....(((((((((....(((.(((..((((((((((..............))))))))))...))).)))....)))))
))))..))).)).))))).)))))))....)))))))))))))..)))))..))))).)))).)))))..))))).))))))..))))).))
SIMILARITIES| miRBase ath-MIR169c: 4e-40 PMRD ath-miR169c: 4e-40 microPC miR169: 0.00002 | UniProt no hits RFAM MIR169_2: 4e-22 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLiD
references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
[2] Ma Z, Coruh C, Axtell MJ, Plant Cell. 22:1090-1103(2010)., "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"
