ABOUT THIS RECORDspecies: Arabidopsis lyrata
miRNA family: MIR408
source: miRBase, original name: aly-MIR408 (MI0014596)
SEQUENCE & STRUCTURE| miRNA ATGCACTGCCTCTTCCCTGGC miRNA* CAGGGAACAAGCAGAGCATGG mismatches: 6 bulges: 0 |
pre-miRNA
AAAGGTTAGATTGGTATTGCAATGAAAGAAGTGGTAATGATAGAGAGAGACAGGGAACAAGCAGAGCATGGATTGAGTTTACTAAAACATTAAACGACTC
TGTTTTGTCTCTACCCATGCACTGCCTCTTCCCTGGCTCCCTCTTTTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTATTTCTTTCTCTCCTTTCATTTC
AATGGATTTTT
dot-bracket secondary structure
(((((((..(((((.........(((((((((((....((.((((((((((((((((...((((.((((((...(((.....(((((((...........
))))))).)))...)))))).))))...))))))).....................))))))))).)).......)))))))))))............))
))).)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLiD
references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
[2] Ma Z, Coruh C, Axtell MJ, Plant Cell. 22:1090-1103(2010)., "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"
AAAGGTTAGATTGGTATTGCAATGAAAGAAGTGGTAATGATAGAGAGAGACAGGGAACAAGCAGAGCATGGATTGAGTTTACTAAAACATTAAACGACTC
TGTTTTGTCTCTACCCATGCACTGCCTCTTCCCTGGCTCCCTCTTTTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTATTTCTTTCTCTCCTTTCATTTC
AATGGATTTTT
dot-bracket secondary structure
(((((((..(((((.........(((((((((((....((.((((((((((((((((...((((.((((((...(((.....(((((((...........
))))))).)))...)))))).))))...))))))).....................))))))))).)).......)))))))))))............))
))).)))))))
SIMILARITIES| miRBase ath-MIR408: 8e-56 PMRD ath-miR408: 8e-56 microPC miR408: 0.000000000003 | UniProt no hits RFAM MIR408: 2e-47 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLiD
references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
[2] Ma Z, Coruh C, Axtell MJ, Plant Cell. 22:1090-1103(2010)., "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"
