ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR159
source: miRBase, original name: ath-MIR159c (MI0001085)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCCT miRNA* GAGCTCCCTTCCTCCAAAAC mismatches: 1 bulges: 1 |
pre-miRNA
GTGTAACAGAAGGAGCTCCCTTCCTCCAAAACGAAGAGGACAAGATTTGAGGAACTAAAATGCAGAATCTAAGAGTTCATGTCTTCCTCATAGAGAGTGC
GCGGTGTTAAAAGCTTGAAGAAAGCACACTTTAAGGGGATTGCACGACCTCTTAGATTCTCCCTCTTTCTCTACATATCATTCTCTTCTCTTCGTTTGGA
TTGAAGGGAGCTCCTTTTCTTCTTC
dot-bracket secondary structure
.......((((((((((((((((.((((((.(((((((((...(((..((((((.......(.((((((((((((.((.(((..(((((.(((((.((((
......((((....)))).....)))).))))).)))))..))).)).)))))))))))))....)))))).....)))......)))))))))))))))
..)))))))))))))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
GTGTAACAGAAGGAGCTCCCTTCCTCCAAAACGAAGAGGACAAGATTTGAGGAACTAAAATGCAGAATCTAAGAGTTCATGTCTTCCTCATAGAGAGTGC
GCGGTGTTAAAAGCTTGAAGAAAGCACACTTTAAGGGGATTGCACGACCTCTTAGATTCTCCCTCTTTCTCTACATATCATTCTCTTCTCTTCGTTTGGA
TTGAAGGGAGCTCCTTTTCTTCTTC
dot-bracket secondary structure
.......((((((((((((((((.((((((.(((((((((...(((..((((((.......(.((((((((((((.((.(((..(((((.(((((.((((
......((((....)))).....)))).))))).)))))..))).)).)))))))))))))....)))))).....)))......)))))))))))))))
..)))))))))))))))).......
SIMILARITIES| miRBase aly-MIR159c: 6e-60 PMRD ath-miR159c: 3e-126 microPC miR319: 0.0007 | UniProt no hits RFAM MIR159: 6e-125 |
Identical with: ath-miR159c from PMRD (MNEST046933) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
