ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR163
source: miRBase, original name: ath-MIR163 (MI0000196)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAAGAGGACTTGGAACTTCGAT miRNA* CGAGTTCCAACCTCTTCAACG mismatches: 0 bulges: 3 |
pre-miRNA
ACCCGGTGGATAAAATCGAGTTCCAACCTCTTCAACGACAACGATTTCAACACTCTCTTCCAGGAACAACTTCCTCCAGGCAGATGATACTAAAGTGCTG
GAGTTCCCGGTTCCTGAGAGTGAGTCCATATCAAAATGCGCATTCGTTATCACTTGGTTGAACCCATTTGGGGATTTAAATTTGGAGGTGAAATGGAACG
CGTAATTGATGACTCCTACGTGGAACCTCTTCTTAGGAAGAGCACGGTCGAAGAAGTAACTGCGCAGTGCTTAAATCGTAGATGCTAAAGTCGTTGAAGA
GGACTTGGAACTTCGATATTATCCCCCGTGT
dot-bracket secondary structure
((.(((.((((((.(((((((((((((((((((((((((.....((((.((...((((((((((((.......((((((.((..(........).)))))
))).....((((((....((.(((((...(((((..(((((.((((((.((((((..((((((((.....))).)))))......))))))))))))..)
)))).))))))))))))....))))))..))))).)))))))....)).)))).((((.(((((..((......))))))).))))...)))))))))))
))..))))))).))))).)))))).))).))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, Northern, 5'RACE, 454
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[3] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
[4] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
[5] Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes"
ACCCGGTGGATAAAATCGAGTTCCAACCTCTTCAACGACAACGATTTCAACACTCTCTTCCAGGAACAACTTCCTCCAGGCAGATGATACTAAAGTGCTG
GAGTTCCCGGTTCCTGAGAGTGAGTCCATATCAAAATGCGCATTCGTTATCACTTGGTTGAACCCATTTGGGGATTTAAATTTGGAGGTGAAATGGAACG
CGTAATTGATGACTCCTACGTGGAACCTCTTCTTAGGAAGAGCACGGTCGAAGAAGTAACTGCGCAGTGCTTAAATCGTAGATGCTAAAGTCGTTGAAGA
GGACTTGGAACTTCGATATTATCCCCCGTGT
dot-bracket secondary structure
((.(((.((((((.(((((((((((((((((((((((((.....((((.((...((((((((((((.......((((((.((..(........).)))))
))).....((((((....((.(((((...(((((..(((((.((((((.((((((..((((((((.....))).)))))......))))))))))))..)
)))).))))))))))))....))))))..))))).)))))))....)).)))).((((.(((((..((......))))))).))))...)))))))))))
))..))))))).))))).)))))).))).))
SIMILARITIES| miRBase aly-MIR163: 2e-17 PMRD ath-miR163: 0 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miR163 from PMRD (MNEST046939) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, Northern, 5'RACE, 454
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[3] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
[4] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
[5] Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes"
