ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR164
source: miRBase, original name: ath-MIR164c (MI0001087)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCG miRNA* CACGTGTTCTACTACTCCAAC mismatches: 2 bulges: 0 |
pre-miRNA
TAACACTTGATGGAGAAGCAGGGCACGTGCGAACACAAATGAAATCGATCGGTACTTGTTGATCATATTTTCGCACGTGTTCTACTACTCCAACACGTGT
CT
dot-bracket secondary structure
..((((.((.(((((.((.((((((((((((((..(....).....((((((......)))))).....)))))))))))))).)).))))).)).))))
..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Solexa
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[3] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
TAACACTTGATGGAGAAGCAGGGCACGTGCGAACACAAATGAAATCGATCGGTACTTGTTGATCATATTTTCGCACGTGTTCTACTACTCCAACACGTGT
CT
dot-bracket secondary structure
..((((.((.(((((.((.((((((((((((((..(....).....((((((......)))))).....)))))))))))))).)).))))).)).))))
..
SIMILARITIES| miRBase aly-MIR164c: 1e-43 PMRD ath-miR164c: 4e-53 microPC miR164: 0.0003 | UniProt no hits RFAM MIR164: 6e-52 |
Identical with: ath-miR164c from PMRD (MNEST046942) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Solexa
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[3] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
