ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR319
source: miRBase, original name: ath-MIR319b (MI0000545)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGAGCTCCCT miRNA* AGAGCTTTCTTCGGTCCACTC mismatches: 4 bulges: 0 |
pre-miRNA
AGAGAGCTTTCTTCGGTCCACTCATGGAGTAATATGTGAGATTTAATTGACTCTCGACTCATTCATCCAAATACCAAATGAAAGAATTTGTTCTCATATG
GTAAATGAATGAATGATGCGAGAGACAAATTGAGTCTTCACTTCTCTATGCTTGGACTGAAGGGAGCTCCCT
dot-bracket secondary structure
((.(((((..((((((((((..(((((((......(((((((((((((..((((((..((((((((.((..(((((.((((..(((....))))))).))
)))..)).))))))))..))))))...))))))))).))))..)))))))..))))))))))..))))).))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Northern, 5'RACE, cloned, 454
deep sequencing data evidence
references
[1] Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D, Nature. 425:257-263(2003)., "Control of leaf morphogenesis by microRNAs"
[2] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[3] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[4] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
[5] Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes"
AGAGAGCTTTCTTCGGTCCACTCATGGAGTAATATGTGAGATTTAATTGACTCTCGACTCATTCATCCAAATACCAAATGAAAGAATTTGTTCTCATATG
GTAAATGAATGAATGATGCGAGAGACAAATTGAGTCTTCACTTCTCTATGCTTGGACTGAAGGGAGCTCCCT
dot-bracket secondary structure
((.(((((..((((((((((..(((((((......(((((((((((((..((((((..((((((((.((..(((((.((((..(((....))))))).))
)))..)).))))))))..))))))...))))))))).))))..)))))))..))))))))))..))))).))
SIMILARITIES| miRBase aly-MIR319b: 6e-90 PMRD ath-miR319b: 1e-94 microPC miR319: 2e-89 | UniProt no hits RFAM MIR159: 2e-93 |
Identical with: ath-miR319b from PMRD (MNEST046993) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Northern, 5'RACE, cloned, 454
deep sequencing data evidence
references
[1] Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D, Nature. 425:257-263(2003)., "Control of leaf morphogenesis by microRNAs"
[2] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[3] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[4] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
[5] Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes"
