ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR391
source: miRBase, original name: ath-MIR391 (MI0001002)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCGCAGGAGAGATAGCGCCA miRNA* ACGGTATCTCTCCTACGTAGC mismatches: 4 bulges: 0 |
pre-miRNA
TAGAGTGATTACACATACAAGTGGTCTTGCTTCTTCTATGGTTTTAAAACTGCAAATAAAGATTTGCTTCGCAGGAGAGATAGCGCCATCACCTCTTCTA
AGAAGTTAACTAGTGGTGACGGTATCTCTCCTACGTAGCAATCCTTATATATGCATCTTAATACGGAGAGATCAAGGTATTTCAGTTGTTCAATAATCAC
CCTCTA
dot-bracket secondary structure
(((((((((((.....((((.((((((((..(((.((.(.((.((((...((((.((((((..(((((.((.((((((((((.((.((((((..((((..
.)))).......)))))).)).)))))))))).)).)))))..))).))).))))..)))).)).)))))).)))))....))).))))....)))))))
..))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454, Northern, Solexa
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[3] Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes"
TAGAGTGATTACACATACAAGTGGTCTTGCTTCTTCTATGGTTTTAAAACTGCAAATAAAGATTTGCTTCGCAGGAGAGATAGCGCCATCACCTCTTCTA
AGAAGTTAACTAGTGGTGACGGTATCTCTCCTACGTAGCAATCCTTATATATGCATCTTAATACGGAGAGATCAAGGTATTTCAGTTGTTCAATAATCAC
CCTCTA
dot-bracket secondary structure
(((((((((((.....((((.((((((((..(((.((.(.((.((((...((((.((((((..(((((.((.((((((((((.((.((((((..((((..
.)))).......)))))).)).)))))))))).)).)))))..))).))).))))..)))).)).)))))).)))))....))).))))....)))))))
..))))
SIMILARITIES| miRBase aly-MIR391: 3e-46 PMRD ath-miR391: 7e-115 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10313-akr from PMRD (MNEST047413) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454, Northern, Solexa
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[3] Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes"
