ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR395
source: miRBase, original name: ath-MIR395f (MI0001012)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGAAGTGTTTGGGGGGACTC miRNA* GTTCCCTTAAACGCTTCATTG mismatches: 1 bulges: 0 |
pre-miRNA
ATGTCCCCTTGAGTTCCCTTAAACGCTTCATTGTTCATACTTTGTTATCATCTATCGATCGATCAATCAATCTGATGAACACTGAAGTGTTTGGGGGGAC
TCTAGGTGACAT
dot-bracket secondary structure
(((((.(((.((((((((((((((((((((.(((((((...(((..((((((....))).)))....)))....))))))).))))))))))))))))))
)).))).)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 5'RACE, Northern, PCR, MPSS
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[3] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
[4] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
ATGTCCCCTTGAGTTCCCTTAAACGCTTCATTGTTCATACTTTGTTATCATCTATCGATCGATCAATCAATCTGATGAACACTGAAGTGTTTGGGGGGAC
TCTAGGTGACAT
dot-bracket secondary structure
(((((.(((.((((((((((((((((((((.(((((((...(((..((((((....))).)))....)))....))))))).))))))))))))))))))
)).))).)))))
SIMILARITIES| miRBase aly-MIR395f: 8e-33 PMRD ath-miR395f: 4e-59 microPC no hits | UniProt no hits RFAM mir-395: 7e-58 |
Identical with: ath-miR395f from PMRD (MNEST047007) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 5'RACE, Northern, PCR, MPSS
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[3] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
[4] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
