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ABOUT THIS RECORD

ID: MNEST040099
species: Arabidopsis thaliana
source: miRBase, original name: ath-MIR401 (MI0001070)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CGAAACTGGTGTCGACCGACA

miRNA*
 TCGCTCGACACTCATCGCT

mismatches: 4
bulges: 2
View larger
pre-miRNA
 TATATAGACCCTAAAAACGTCCAGGGACTAATAATGCAAATATGGAAATCTTCTGGGGCAAACTTGAGCTTCTGAAAACTTGAAAGCGTTTAGGGTTTTT
GCTGGGCCGAAACTGGTGTCGACCGACACCAAGAGTGTGTCGCTCGACACTCATCGCTGATTCCTGAACCAAAATCGTTCTTAGTTTCCTTTTCCTTAGT
TTTTGCTCCAAAATGTCTCCTTATCTCCATTGTTGTCCCATTGCATAGAA

dot-bracket secondary structure
......(((.........)))..(((((.(((((((...(((.(((.((.((.(((((((((.(((((.....(.(((((.((.((((.....(((((..
..(.(((.((....((((((((.(((((((....).)))))).))))))))..))))).).....))))).....)))).))))))).).....))))).
.))))))))).)).)).))).)))...))))))))))))...........


SIMILARITIES
miRBase ath-MIR855: 5e-76

PMRD ath-miR401: 4e-141

microPC no hits		UniProt no hits

RFAM no hits

Identical with: ath-miR401 from PMRD (MNEST047022)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references
[1] Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"



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