ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR402
source: miRBase, original name: ath-MIR402 (MI0001071)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCGAGGCCTATTAAACCTCTG miRNA* GGGGTTTATAGACCTCGAATC mismatches: 1 bulges: 1 |
pre-miRNA
CGTGGTAGATAAGTTTGAGTTGCATAGTGGCAGTCTTCCTTTGTTTGTTAACCCATATTTTCATGATTCGAGGCCTATTAAACCTCTGTTACATCTGCTT
TTTGAAAAGTTGTCATTTTTCTGAAATCTTCTTGCCTCAATTTCCAACAGCAGATTCATCTTTCATTGGATGATCCGTTAGTTTTTGATAGAAAAAATGA
GGTGGGAAGAAATTAAGACTGACTTCGAAATAGCCTTTAAAATAGGGGTTTATAGACCTCGAATCATATCAAACGAGTCTGCTACTATGCTACTGAAAAC
TTTATCAAA
dot-bracket secondary structure
.......(((((((((.(((.((((((((((((.(((.....(((((...............(((((((((((.((((.(((((((((((......((((
((((((.((((.(((......)))..((((((..(((((.(((((((.(((.(((((((((......))))))...))).))).)))...))))...)))
))..))))))......))))...))))))).)))......))))))))))))))).)))))))))))..)))))))).)))))))))))).)))..))))
.)))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, Northern, MPSS, 454
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"
[3] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
CGTGGTAGATAAGTTTGAGTTGCATAGTGGCAGTCTTCCTTTGTTTGTTAACCCATATTTTCATGATTCGAGGCCTATTAAACCTCTGTTACATCTGCTT
TTTGAAAAGTTGTCATTTTTCTGAAATCTTCTTGCCTCAATTTCCAACAGCAGATTCATCTTTCATTGGATGATCCGTTAGTTTTTGATAGAAAAAATGA
GGTGGGAAGAAATTAAGACTGACTTCGAAATAGCCTTTAAAATAGGGGTTTATAGACCTCGAATCATATCAAACGAGTCTGCTACTATGCTACTGAAAAC
TTTATCAAA
dot-bracket secondary structure
.......(((((((((.(((.((((((((((((.(((.....(((((...............(((((((((((.((((.(((((((((((......((((
((((((.((((.(((......)))..((((((..(((((.(((((((.(((.(((((((((......))))))...))).))).)))...))))...)))
))..))))))......))))...))))))).)))......))))))))))))))).)))))))))))..)))))))).)))))))))))).)))..))))
.)))))...
SIMILARITIES| miRBase aly-MIR402: 0.0000003 PMRD ath-miR402: 3e-176 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miR402 from PMRD (MNEST047023) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, Northern, MPSS, 454
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"
[3] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
