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ABOUT THIS RECORD

ID: MNEST040101
species: Arabidopsis thaliana
miRNA family: MIR403
source: miRBase, original name: ath-MIR403 (MI0001072)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTAGATTCACGCACAAACTCG

miRNA*
TGTTTTGTGCTTGAATCTAATT

mismatches: 3
bulges: 1

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pre-miRNA
TTGTCATTAGAAGAGTCGTATTACATGTTTTGTGCTTGAATCTAATTCAACAGGCTTTATGTAAGAGATTCTTTAACAATTCCTATAATCTTTGTTGTTG
GATTAGATTCACGCACAAACTCGTAATCTGTCTTT


dot-bracket secondary structure
...........((((.((.(((((..((((.((((.((((((((((((((((.((.....)).(((((((................)))))))..)))))
))))))))))).))))))))..))))).)).))))



SIMILARITIES
miRBase aly-MIR403: 8e-21

PMRD ppl-miR403: 1e-72

microPC miR403: 0.0001
UniProt no hits

RFAM MIR403: 2e-61

Identical with: ath-miR403 from PMRD (MNEST047024)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
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evidence: cloned, Northern, 3'RACE
deep sequencing data evidence

references

[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[3] Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"
[4] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
[5] Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes"




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