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ABOUT THIS RECORD

ID: MNEST040102
species: Arabidopsis thaliana
source: miRBase, original name: ath-MIR404 (MI0001073)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTAACGCTGGCGGTTGCGGCAGC

miRNA*
 TGCCGCAACCGCAGGTTTCTTTGT

mismatches: 6
bulges: 0
View larger
pre-miRNA
 TAGCATGTTCGTTTCATTAACGCTGGCGGTTGCGGCAGCGGCTGCGGTAGCGGTGGCGGCAAACACTACCGCAGGTTGTTGTTCGTTTTGTTGCCGCAGA
CGCTGCCGCAGCCGCTGCCGCAACCGCAGGTTTCTTTGTTCGTTTCGACG

dot-bracket secondary structure
.....((..((...((.....(((.(((((((((((((((((((((((((((...(((((((.((..((.((((....))))..))..)))))))))...
))))))))))))))))))))))))))).))).....))..))...))...


SIMILARITIES
miRBase no hits

PMRD ath-miR404: 1e-81

microPC no hits		UniProt no hits

RFAM no hits

Identical with: ath-miR404 from PMRD (MNEST047025)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Solexa

references
[1] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[2] Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"



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