ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR405
source: miRBase, original name: ath-MIR405b (MI0001075)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAGTTGGGTCTAACCCATAACT miRNA* TTATGGGTTAGACCCAACTCATTT mismatches: 0 bulges: 0 |
pre-miRNA
TTAACCCATTTAACAATTCAACCCATCAAATGAAATGAGTTATGGGTTAGACCCAACTCATTTAACAAAATGAGTTGGGTCTAACCCATAACTCATTTAA
TTATAAACTCATTTGATTATGAGT
dot-bracket secondary structure
...............(((((....(((((((((((((((((((((((((((((((((((((((....))))))))))))))))))))))))))))))...
........)))))))))..)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"
TTAACCCATTTAACAATTCAACCCATCAAATGAAATGAGTTATGGGTTAGACCCAACTCATTTAACAAAATGAGTTGGGTCTAACCCATAACTCATTTAA
TTATAAACTCATTTGATTATGAGT
dot-bracket secondary structure
...............(((((....(((((((((((((((((((((((((((((((((((((((....))))))))))))))))))))))))))))))...
........)))))))))..)))))
SIMILARITIES| miRBase ath-MIR405a: 1e-56 PMRD ath-miR405b: 3e-66 microPC no hits | UniProt no hits RFAM MIR405: 2e-34 |
Identical with: ath-miR405b from PMRD (MNEST047027) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"
