ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR405
source: miRBase, original name: ath-MIR405d (MI0001077)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAGTTGGGTCTAACCCATAACT miRNA* TTATGGGTTGACCCAACTCATTT mismatches: 0 bulges: 1 |
pre-miRNA
ACCCATCAAATGAAATGAGTTATGGGTTGACCCAACTCATTTTGTTAAATGAGTTGGGTCTAACCCATAACTCATTTAATCATAAA
dot-bracket secondary structure
.........(((((((((((((((((((((((((((((((((....)))))))))))))).)))))))))))))))...))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"
ACCCATCAAATGAAATGAGTTATGGGTTGACCCAACTCATTTTGTTAAATGAGTTGGGTCTAACCCATAACTCATTTAATCATAAA
dot-bracket secondary structure
.........(((((((((((((((((((((((((((((((((....)))))))))))))).)))))))))))))))...))))...
SIMILARITIES| miRBase ath-MIR405a: 3e-31 PMRD ath-miR405d: 1e-43 microPC no hits | UniProt no hits RFAM MIR405: 9e-26 |
Identical with: ath-miR405d from PMRD (MNEST047028) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"
