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ABOUT THIS RECORD

ID: MNEST040105
species: Arabidopsis thaliana
miRNA family: MIR405
source: miRBase, original name: ath-MIR405d (MI0001077)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGAGTTGGGTCTAACCCATAACT

miRNA*
TTATGGGTTGACCCAACTCATTT

mismatches: 0
bulges: 1

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pre-miRNA
ACCCATCAAATGAAATGAGTTATGGGTTGACCCAACTCATTTTGTTAAATGAGTTGGGTCTAACCCATAACTCATTTAATCATAAA

dot-bracket secondary structure
.........(((((((((((((((((((((((((((((((((....)))))))))))))).)))))))))))))))...))))...


SIMILARITIES
miRBase ath-MIR405a: 3e-31

PMRD ath-miR405d: 1e-43

microPC no hits
UniProt no hits

RFAM MIR405: 9e-26

Identical with: ath-miR405d from PMRD (MNEST047028)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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evidence: cloned

references

[1] Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"




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