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ABOUT THIS RECORD

ID: MNEST040106
species: Arabidopsis thaliana
source: miRBase, original name: ath-MIR406 (MI0001078)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGAATGCTATTGTAATCCAG

miRNA*
GAGACAGTAACTATTCAAAT

mismatches: 10
bulges: 1

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pre-miRNA
TAAAGTCTTAATTTTTAGTTATCACGATTTAGCACATATCAATCTATAGATTTGATTTTTCTTTTATTAGTTCTTAAATTTTGATTTGAGACAGTAACTA
TTCAAATAGAATGCTATTGTAATCCAGAATCCGAAAGAAACGAATCAAAAAAAAAAAAAACGAGTCTTCATAGTAAAAATCGATTAACTAAAAAGGATGG


dot-bracket secondary structure
....((((...((((((((((...((((((.............(((((((((((.(((((.((((.............((((((((((..((((((..((
(((.....))))).))))))...........(....)...)))))))))))))).))))))))))))..))))...))))))..))))))))))))))..



SIMILARITIES
miRBase no hits

PMRD ath-miR406: 3e-86

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
evidence: cloned

references

[1] Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"




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