ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: miRBase, original name: ath-MIR406 (MI0001078)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGAATGCTATTGTAATCCAG miRNA* GAGACAGTAACTATTCAAAT mismatches: 10 bulges: 1 |
pre-miRNA
TAAAGTCTTAATTTTTAGTTATCACGATTTAGCACATATCAATCTATAGATTTGATTTTTCTTTTATTAGTTCTTAAATTTTGATTTGAGACAGTAACTA
TTCAAATAGAATGCTATTGTAATCCAGAATCCGAAAGAAACGAATCAAAAAAAAAAAAAACGAGTCTTCATAGTAAAAATCGATTAACTAAAAAGGATGG
dot-bracket secondary structure
....((((...((((((((((...((((((.............(((((((((((.(((((.((((.............((((((((((..((((((..((
(((.....))))).))))))...........(....)...)))))))))))))).))))))))))))..))))...))))))..))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
evidence: cloned
references
[1] Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"
TAAAGTCTTAATTTTTAGTTATCACGATTTAGCACATATCAATCTATAGATTTGATTTTTCTTTTATTAGTTCTTAAATTTTGATTTGAGACAGTAACTA
TTCAAATAGAATGCTATTGTAATCCAGAATCCGAAAGAAACGAATCAAAAAAAAAAAAAACGAGTCTTCATAGTAAAAATCGATTAACTAAAAAGGATGG
dot-bracket secondary structure
....((((...((((((((((...((((((.............(((((((((((.(((((.((((.............((((((((((..((((((..((
(((.....))))).))))))...........(....)...)))))))))))))).))))))))))))..))))...))))))..))))))))))))))..
SIMILARITIES| miRBase no hits PMRD ath-miR406: 3e-86 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
evidence: cloned
references
[1] Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"
