miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST040107
species: Arabidopsis thaliana
source: miRBase, original name: ath-MIR407 (MI0001079)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTAAATCATATACTTTTGGT

miRNA*
 CAAAAGTATGTGATTAAAACG

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TGGGAAAAATGTTAAAAAAATCGCCAACTTTTAAAAATGGGACAAAAAAATCGCCAACTCCTGAAATGTCATTTAAATCATATACTTTTGGTTGACTTTT
CCAGAAAGATAATAAAGCAAAGATTCGTAATCAACAAAACTTTGCTCTGTTATCTTTCTAAAGAACTCAATCAAAAGTATGTGATTAAAACGACATTTCA
GGAGTTGGTGATTTTTCATCCCATTTTTCAAAGTTGGCAATTTTTTTGACATTTTTTCCAATG

dot-bracket secondary structure
(((((((((((((((((((((.(((((((((.((((((((((...(((((((((((((((((((((((((.(((.((((((((((((((((((((.((((
..((((((((((((.(((((((.((.((.....)).)).))))))).))))))))))))..)))).)))))))))))))))))))).))).)))))))))
))))))))))))))))..)))))))))).))))))))).)))))))))))))))))))))...


SIMILARITIES
miRBase no hits

PMRD ath-miR407: 9e-87

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references
[1] Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"



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