ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: miRBase, original name: ath-MIR413 (MI0001424)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATAGTTTCTCTTGTTCTGCAC miRNA* GCAGAAACTGGAACTATTC mismatches: 4 bulges: 2 |
pre-miRNA
GATCCATAGTTTCTCTTGTTCTGCACATCCACTAACTTCAGGAACCATGTCCCAGTTTCAGGTTAGATCAAGTGGGAAAACAAATGGAAGATTGTGGCTA
TGCAGAAACTGGAACTATTCGTC
dot-bracket secondary structure
(((..((((((((.....(((((((...((((...((((..........(((((.((((......))..)).))))).........))))...))))...
)))))))...))))))))..)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"
[2] Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"
GATCCATAGTTTCTCTTGTTCTGCACATCCACTAACTTCAGGAACCATGTCCCAGTTTCAGGTTAGATCAAGTGGGAAAACAAATGGAAGATTGTGGCTA
TGCAGAAACTGGAACTATTCGTC
dot-bracket secondary structure
(((..((((((((.....(((((((...((((...((((..........(((((.((((......))..)).))))).........))))...))))...
)))))))...))))))))..)))
SIMILARITIES| miRBase no hits PMRD ath-miR413: 1e-65 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miR413 from PMRD (MNEST047032) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"
[2] Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"
