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ABOUT THIS RECORD
ID:
MNEST040112
species:
Arabidopsis thaliana
source:
miRBase, original name:
ath-MIR416
(
MI0001427
)
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGTTCGTACGTACACTGTTCA
miRNA*
AACCCGGTTTGTACGTATGGACCGC
mismatches:
0
bulges:
4
View larger
pre-miRNA
CGAAACTG
AACCCGGTTTGTACGTATGGACCGC
GTCGTTGGAATCCAAAAGAACCA
GGTTCGTACGTACACTGTTCA
TCG
dot-bracket secondary structure
(((...((
(((..(((..(((((((((((((..
.((.((((...))))..))....
)))))))))))))))))))))
)))
SIMILARITIES
miRBase
no hits
PMRD
ath-miR416
:
4e-40
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ath-miR416
from PMRD (
MNEST047035
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Northern
references
[
1
] Jones-Rhoades MW, Bartel DP, Bartel B,
Annu Rev Plant Biol. 57:19-53(2006).
,
"MicroRNAS and their regulatory roles in plants"
[
2
] Wang XJ, Reyes JL, Chua NH, Gaasterland T,
Genome Biol. 5:R65(2004).
,
"Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"