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ABOUT THIS RECORD

ID: MNEST040112
species: Arabidopsis thaliana
source: miRBase, original name: ath-MIR416 (MI0001427)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGTTCGTACGTACACTGTTCA

miRNA*
AACCCGGTTTGTACGTATGGACCGC

mismatches: 0
bulges: 4

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pre-miRNA
CGAAACTGAACCCGGTTTGTACGTATGGACCGCGTCGTTGGAATCCAAAAGAACCAGGTTCGTACGTACACTGTTCATCG

dot-bracket secondary structure
(((...(((((..(((..(((((((((((((...((.((((...))))..))....))))))))))))))))))))))))


SIMILARITIES
miRBase no hits

PMRD ath-miR416: 4e-40

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ath-miR416 from PMRD (MNEST047035)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern

references

[1] Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"
[2] Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"




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