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ABOUT THIS RECORD

ID: MNEST040113
species: Arabidopsis thaliana
source: miRBase, original name: ath-MIR417 (MI0001428)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GAAGGTAGTGAATTTGTTCGA

miRNA*
AAAACACGTCACTATTTCCTTTAT

mismatches: 3
bulges: 5

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pre-miRNA
AAATATATTCAAAAGTGGTCAAAACACGTCACTATTTCCTTTATGTTTTCCCCTTATTGATGGAAATGGTTAAACATGAAGGTAGTGAATTTGTTCGAAT
AATATGTTGATATATTT


dot-bracket secondary structure
((((((((.(((..((..((..((((..((((((...(((((((((((..((...(((......)))))..)))))))))))))))))...)))).))..
.))...)))))))))))



SIMILARITIES
miRBase no hits

PMRD ath-miR417: 5e-62

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ath-miR417 from PMRD (MNEST047036)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern

references

[1] Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"
[2] Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"




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