ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: miRBase, original name: ath-MIR417 (MI0001428)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAAGGTAGTGAATTTGTTCGA miRNA* AAAACACGTCACTATTTCCTTTAT mismatches: 3 bulges: 5 |
pre-miRNA
AAATATATTCAAAAGTGGTCAAAACACGTCACTATTTCCTTTATGTTTTCCCCTTATTGATGGAAATGGTTAAACATGAAGGTAGTGAATTTGTTCGAAT
AATATGTTGATATATTT
dot-bracket secondary structure
((((((((.(((..((..((..((((..((((((...(((((((((((..((...(((......)))))..)))))))))))))))))...)))).))..
.))...)))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"
[2] Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"
AAATATATTCAAAAGTGGTCAAAACACGTCACTATTTCCTTTATGTTTTCCCCTTATTGATGGAAATGGTTAAACATGAAGGTAGTGAATTTGTTCGAAT
AATATGTTGATATATTT
dot-bracket secondary structure
((((((((.(((..((..((..((((..((((((...(((((((((((..((...(((......)))))..)))))))))))))))))...)))).))..
.))...)))))))))))
SIMILARITIES| miRBase no hits PMRD ath-miR417: 5e-62 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miR417 from PMRD (MNEST047036) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"
[2] Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"
