ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR472
source: miRBase, original name: ath-MIR472 (MI0005102)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTTCCTACTCCGCCCATACC miRNA* ATGGTCGAAGTAGGCAAAATC mismatches: 4 bulges: 0 |
pre-miRNA
TCTGTATGTATGTATGGTCGAAGTAGGCAAAATCTCACCTTTCTAGCAGATCAACAATGAATTTTGTGGAATAGATGTTGGATTTGTAAGGTTTTGGTGT
TTGCAAGTGTTGAGATGCGCAAGATTTGAGTAAGATTTTTCCTACTCCGCCCATACCATACATACACC
dot-bracket secondary structure
..(((((((((((((((.((.((((((.(((((((.(((..(((.(((..((((((......((((..((..((((.(((......))).)))).....)
)..))))))))))..)))...)))...).)).))))))).)))))).)).))))).))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: MPSS, Northern, 454, cloned
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
[3] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
TCTGTATGTATGTATGGTCGAAGTAGGCAAAATCTCACCTTTCTAGCAGATCAACAATGAATTTTGTGGAATAGATGTTGGATTTGTAAGGTTTTGGTGT
TTGCAAGTGTTGAGATGCGCAAGATTTGAGTAAGATTTTTCCTACTCCGCCCATACCATACATACACC
dot-bracket secondary structure
..(((((((((((((((.((.((((((.(((((((.(((..(((.(((..((((((......((((..((..((((.(((......))).)))).....)
)..))))))))))..)))...)))...).)).))))))).)))))).)).))))).))))))))))..
SIMILARITIES| miRBase aly-MIR472: 8e-40 PMRD ath-miR472: 2e-92 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miR472 from PMRD (MNEST047044) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: MPSS, Northern, 454, cloned
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
[3] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
