ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR773
source: miRBase, original name: ath-MIR773b (MI0014666)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGATTCCAGCTTTTGTCTC miRNA* GGCAATAACTTGAGCAAACA mismatches: 4 bulges: 1 |
pre-miRNA
GGTTGAAGGTGGCAATAACCTCAAATATATCAGAGGGTGTAGATACTCAACGACTATAGGAGGCAATAACTTGAGCAAACAATTGATTGCAGAAATCCAT
CGACTAAAGCTGTCACCTGTTTGATTCCAGCTTTTGTCTCCTTACCTGTTGAGTGTCTAAACTCTCTGGTACGTTCATAGTTGTTGCTGCCTTTCGCT
dot-bracket secondary structure
(((.(((((..((((((((....((..(((((((((((.(((((((((((((.....(((((((((...((.(((((((((..((((.((.....((...
.)).....)).))))..)))))).))).))...)))))))))....))))))))))))).)))))))))))..))....))))))))..))))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
GGTTGAAGGTGGCAATAACCTCAAATATATCAGAGGGTGTAGATACTCAACGACTATAGGAGGCAATAACTTGAGCAAACAATTGATTGCAGAAATCCAT
CGACTAAAGCTGTCACCTGTTTGATTCCAGCTTTTGTCTCCTTACCTGTTGAGTGTCTAAACTCTCTGGTACGTTCATAGTTGTTGCTGCCTTTCGCT
dot-bracket secondary structure
(((.(((((..((((((((....((..(((((((((((.(((((((((((((.....(((((((((...((.(((((((((..((((.((.....((...
.)).....)).))))..)))))).))).))...)))))))))....))))))))))))).)))))))))))..))....))))))))..))))).)))
SIMILARITIES| miRBase ath-MIR773: 4e-33 PMRD ath-miR773: 4e-33 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
