ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR774
source: miRBase, original name: ath-MIR774b (MI0014668)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGATGAAGATATGGGTGAT miRNA* TTTATGTTAGCAATTTAATTCTTTTTCATCCATATTTTCATCTCGAA mismatches: 0 bulges: 26 |
pre-miRNA
GAGTGTTGATTATATGGATTCATTTGAGATGAAGATATGGGTGATGATCAATGCTTACGATTTTGGTCAATTTATGTTAGCAATTTAATTCTTTTTCATC
CATATTTTCATCTCGAATTTAATCTTTAAAAAAGCGTTT
dot-bracket secondary structure
....(((........(((((.((((((((((((((((((((((((((((((..(....)...))))))).....((....)).............)))))
))))))))))))))))))..))))).......)))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
GAGTGTTGATTATATGGATTCATTTGAGATGAAGATATGGGTGATGATCAATGCTTACGATTTTGGTCAATTTATGTTAGCAATTTAATTCTTTTTCATC
CATATTTTCATCTCGAATTTAATCTTTAAAAAAGCGTTT
dot-bracket secondary structure
....(((........(((((.((((((((((((((((((((((((((((((..(....)...))))))).....((....)).............)))))
))))))))))))))))))..))))).......)))....
SIMILARITIES| miRBase aly-MIR774: 0.000002 PMRD ath-miRf10055-akr: 0.0001 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"
