ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR781
source: miRBase, original name: ath-MIR781 (MI0005111)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGAGTTTTCTGGATACTTA miRNA* AGTATCCAGAAAACTCTAAATT mismatches: 0 bulges: 1 |
pre-miRNA
TCAAATTAGAGTTTTCTGGATACTTATTAGTTACTAACAAAGAGAGGGCTTCTTCGATATTAACTTTTAAGTATCCAGAAAACTCTAAATTTGA
dot-bracket secondary structure
((((((((((((((((((((((((((..(((((.((.(.(((((.....))))).).)).)))))..))))))))))))))))))).)))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: MPSS, Northern, 454
deep sequencing data evidence
references
[1] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
[2] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
TCAAATTAGAGTTTTCTGGATACTTATTAGTTACTAACAAAGAGAGGGCTTCTTCGATATTAACTTTTAAGTATCCAGAAAACTCTAAATTTGA
dot-bracket secondary structure
((((((((((((((((((((((((((..(((((.((.(.(((((.....))))).).)).)))))..))))))))))))))))))).)))))))
SIMILARITIES| miRBase aly-MIR781: 2e-30 PMRD ath-miRf10648-akr: 2e-48 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miR781 from PMRD (MNEST047052) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: MPSS, Northern, 454
deep sequencing data evidence
references
[1] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
[2] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
