ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR2934
source: miRBase, original name: ath-MIR782 (MI0005112)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACAAACACCTTGGATGTTCTT miRNA* GAAAATCCAAGGCGTTTGCAG mismatches: 3 bulges: 0 |
pre-miRNA
AACCTTTTTCTACAAACACCTTGGATGTTCTTTAAATAAGATGAAAAGGCTATTATTCTAATGAACAACATGAAGCCAAAAGAAAATCCAAGGCGTTTGC
AGAAAGAGGTT
dot-bracket secondary structure
(((((((((((.(((((.((((((((.((((((........(....)((((.((((((....)).....)))))))).)))))).)))))))).))))).
)))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: MPSS, Northern
references
[1] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
AACCTTTTTCTACAAACACCTTGGATGTTCTTTAAATAAGATGAAAAGGCTATTATTCTAATGAACAACATGAAGCCAAAAGAAAATCCAAGGCGTTTGC
AGAAAGAGGTT
dot-bracket secondary structure
(((((((((((.(((((.((((((((.((((((........(....)((((.((((((....)).....)))))))).)))))).)))))))).))))).
)))))))))))
SIMILARITIES| miRBase ath-MIR2934: 2e-58 PMRD ath-miRf11054-akr: 2e-58 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miR782 from PMRD (MNEST047053) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: MPSS, Northern
references
[1] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
