ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR825
source: miRBase, original name: ath-MIR825 (MI0005381)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCTCAAGAAGGTGCATGAAC miRNA* TCAAGCACCAGCTCGAAGAAGC mismatches: 4 bulges: 1 |
pre-miRNA
CTTTCTATAATTACTTTTTGTATAGAATTCACTAGTTGATTCCATCGACTCGTTCAAGCACCAGCTCGAAGAAGCTTAGCTAATTTATCTTAGAAAATAA
TGAAAAAGCTATGCTTCTCAAGAAGGTGCATGAACAAGTTGATGTATATTTTGATGTGTAAAGACCAAAATTGGATCTCACATGTG
dot-bracket secondary structure
..(((((((...........)))))))..(((..........((((((((.(((((.(((((..((.((.(((((.(((((..(((((..(.....)..)
))))..))))).))))))).))..))))).))))).)))))))).........(((((...((((((....))).)))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
CTTTCTATAATTACTTTTTGTATAGAATTCACTAGTTGATTCCATCGACTCGTTCAAGCACCAGCTCGAAGAAGCTTAGCTAATTTATCTTAGAAAATAA
TGAAAAAGCTATGCTTCTCAAGAAGGTGCATGAACAAGTTGATGTATATTTTGATGTGTAAAGACCAAAATTGGATCTCACATGTG
dot-bracket secondary structure
..(((((((...........)))))))..(((..........((((((((.(((((.(((((..((.((.(((((.(((((..(((((..(.....)..)
))))..))))).))))))).))..))))).))))).)))))))).........(((((...((((((....))).)))))))))))
SIMILARITIES| miRBase aly-MIR825: 4e-42 PMRD ath-miR825: 5e-103 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10747-akr from PMRD (MNEST047847) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
