ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR826
source: miRBase, original name: ath-MIR826 (MI0005382)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGTCCGGTTTTGGATACGTG miRNA* CGTGTCCAAAACCAGATTATC mismatches: 1 bulges: 0 |
pre-miRNA
AGAGACGTGGATGCTTCTCGTCCACAAGTTCTTTGGTGCCTCTATGATATAGTCCGGTTTTGGATACGTGAAAATCATATCATATTGCTGCTGTGAAAAG
TTAATTTTCACGTGTCCAAAACCAGATTATCTCATATTGCTGCTGTGTATCTTATCATCTTTTTCCTGCTACTCTTAC
dot-bracket secondary structure
((((..(((((((.....))))))).........(((((...(((((.((((((.((((((((((((((((((((((((.((......)).)))))....
....))))))))))))))))))).)))))).)))))..)).)))...........................))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
AGAGACGTGGATGCTTCTCGTCCACAAGTTCTTTGGTGCCTCTATGATATAGTCCGGTTTTGGATACGTGAAAATCATATCATATTGCTGCTGTGAAAAG
TTAATTTTCACGTGTCCAAAACCAGATTATCTCATATTGCTGCTGTGTATCTTATCATCTTTTTCCTGCTACTCTTAC
dot-bracket secondary structure
((((..(((((((.....))))))).........(((((...(((((.((((((.((((((((((((((((((((((((.((......)).)))))....
....))))))))))))))))))).)))))).)))))..)).)))...........................))))...
SIMILARITIES| miRBase no hits PMRD ath-miR826: 3e-98 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miR826 from PMRD (MNEST047059) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
