ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR828
source: miRBase, original name: ath-MIR828 (MI0005384)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTGCTTAAATGAGTATTCCA miRNA* AGATGCTCATTTGAGCAAGCAA mismatches: 3 bulges: 0 |
pre-miRNA
GTGACAAAGTCACAAAAGTGATAAACTCTCCTTTCCACTTTCTAATGTTTCTTGCTTAAATGAGTATTCCATGTAAAAATGATTCACTCACTCGTATGGG
TGGGTTGGGTTTTCTCTTCATGAGATGCTCATTTGAGCAAGCAATGTTTGGAAGTGGGACTATTTAATATCATGTATGAGTTTTATCTTTT
dot-bracket secondary structure
(((((...)))))......(((((((((....((((((((((.((((((.(((((((((((((((((..((((.......(((((((((((((....)))
)))).)))))).......))))..))))))))))))))))).)))))).)))))))))).......((((...))))))).))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
GTGACAAAGTCACAAAAGTGATAAACTCTCCTTTCCACTTTCTAATGTTTCTTGCTTAAATGAGTATTCCATGTAAAAATGATTCACTCACTCGTATGGG
TGGGTTGGGTTTTCTCTTCATGAGATGCTCATTTGAGCAAGCAATGTTTGGAAGTGGGACTATTTAATATCATGTATGAGTTTTATCTTTT
dot-bracket secondary structure
(((((...)))))......(((((((((....((((((((((.((((((.(((((((((((((((((..((((.......(((((((((((((....)))
)))).)))))).......))))..))))))))))))))))).)))))).)))))))))).......((((...))))))).))))))....
SIMILARITIES| miRBase aly-MIR828: 5e-60 PMRD ath-miR828: 5e-106 microPC no hits | UniProt no hits RFAM MIR828: 2e-50 |
Identical with: ath-miR828 from PMRD (MNEST047061) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
