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ABOUT THIS RECORD

ID: MNEST040149
species: Arabidopsis thaliana
source: miRBase, original name: ath-MIR830 (MI0005386)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAACTATTTTGAGAAGAAGTG

miRNA*
CCTCTTCTCCAAATAGTTTAGG

mismatches: 3
bulges: 1

View larger
pre-miRNA
CAGAGTCTCGCTAGTGTCTTTACTAAACACAAAATCTGTAAACGCCTCGATCTCCTCTTCTCCAAATAGTTTAGGTTAGCTGACATATAATAATTCAATA
GACCCCAGTTTCTCCAGATAACCTAACTATTTTGAGAAGAAGTGAACGAAGAGCGATTACAAGTTAGGAGAGTGCTTGAATTTTGAAGAACATCG


dot-bracket secondary structure
..(((((((.((.((((.........))))..((..(((((.(((((((.((.(.(((((((.((((((((.((((((.(((............((....
))............))).)))))))))))))).))))))).).)).)).)).))).)))))..)).)).))).))))..................



SIMILARITIES
miRBase no hits

PMRD ath-miR830: 2e-108

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ath-miR830 from PMRD (MNEST047062)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
degradome data
download this record
evidence: 454, cloned, Solexa
deep sequencing data evidence

references

[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[3] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"




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