ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR834
source: miRBase, original name: ath-MIR834 (MI0005390)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGTAGCAGTAGCGGTGGTAA miRNA* ACCACCGCTTCTGCTACGAAC mismatches: 4 bulges: 0 |
pre-miRNA
TACAACATATGTTACCAGTTGTGCTATCATTTTTTTCAGCGACAGCCAAAATCACCACCGCTTCTGCTACGAACATGTTAAGCCATCCTTTTAACCGTTG
CTGCCACCACTATTACGGCCATCACAAGAAAATTCATGCAAGTGGAAACGGTGATAGTAGCAGCTGGTATGACACGTTGGTAGCAGTAGCGGTGGTAATG
CCGATAGCGTGAGCGGCAATGGAAGCATTGGTGGTGTCAGAAGCAGTCA
dot-bracket secondary structure
.........((.(((((.(.(((((.(((.........((....)).......(((((((((.(((((((.(((.(((((.((((..............(
((((....((((((((.(((((..((.((....)).))...))))...).)))))))).))))))))).))))).))).))))))).)))))))))..((
((....((....)))))).))).))))).).))))).))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
TACAACATATGTTACCAGTTGTGCTATCATTTTTTTCAGCGACAGCCAAAATCACCACCGCTTCTGCTACGAACATGTTAAGCCATCCTTTTAACCGTTG
CTGCCACCACTATTACGGCCATCACAAGAAAATTCATGCAAGTGGAAACGGTGATAGTAGCAGCTGGTATGACACGTTGGTAGCAGTAGCGGTGGTAATG
CCGATAGCGTGAGCGGCAATGGAAGCATTGGTGGTGTCAGAAGCAGTCA
dot-bracket secondary structure
.........((.(((((.(.(((((.(((.........((....)).......(((((((((.(((((((.(((.(((((.((((..............(
((((....((((((((.(((((..((.((....)).))...))))...).)))))))).))))))))).))))).))).))))))).)))))))))..((
((....((....)))))).))).))))).).))))).))..........
SIMILARITIES| miRBase aly-MIR834: 7e-63 PMRD ath-miR834: 6e-128 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
