ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR838
source: miRBase, original name: ath-MIR838 (MI0005394)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTCTTCTACTTCTTGCACA miRNA* TGCAAGAAGGAGAAGCAAAGT mismatches: 2 bulges: 0 |
pre-miRNA
TACTTTTCTAATATCACGAGGACTTACATGGCCTCAAGTCACCTGTGGTGTTGTGCAAGAAGGAGAAGCAAAGTCTGTCTATGTATTATGAGATAGCTAC
TTCTATGGCTAGGATATATGTTGTACAAGACCGGCTTTTCTTCTACTTCTTGCACAACCTGAGGTTATTGAGGCTATACAAGTCTTCTTCTATAATGTTA
TTTATTA
dot-bracket secondary structure
.................((((((((..((((((((((...((((.(((.(((((((((((((.(((((.((((((.((((.(((((((((...((((((.
.....))))))...))))....))))))))).)))))).))))).))))))))))))))))))))..))))))))))..)))))))).............
.......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Solexa
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
TACTTTTCTAATATCACGAGGACTTACATGGCCTCAAGTCACCTGTGGTGTTGTGCAAGAAGGAGAAGCAAAGTCTGTCTATGTATTATGAGATAGCTAC
TTCTATGGCTAGGATATATGTTGTACAAGACCGGCTTTTCTTCTACTTCTTGCACAACCTGAGGTTATTGAGGCTATACAAGTCTTCTTCTATAATGTTA
TTTATTA
dot-bracket secondary structure
.................((((((((..((((((((((...((((.(((.(((((((((((((.(((((.((((((.((((.(((((((((...((((((.
.....))))))...))))....))))))))).)))))).))))).))))))))))))))))))))..))))))))))..)))))))).............
.......
SIMILARITIES| miRBase aly-MIR838: 5e-54 PMRD ath-miR838: 2e-115 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miR838 from PMRD (MNEST047067) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Solexa
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
