ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR840
source: miRBase, original name: ath-MIR840 (MI0005396)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACACTGAAGGACCTAAACTAAC miRNA* TTGTTTAGGTCCCTTAGTTTCT mismatches: 3 bulges: 0 |
pre-miRNA
CGTAAAGCAGGTGATTCACCAATTTAGGTTTACATCCACAGTGTGGAAGACACTGAAGGACCTAAACTAACAAAGGTAAACGGCTCAGTGTGCGGGGTAT
TACACTCGGTTTAATGTCTGAATGCGATAATCCGCACGATGATCTCTTTATCTTTGTTTGTTTAGGTCCCTTAGTTTCTTCTATACCGTGAATCCAATCC
TGTATTGGATGAGCTGGTTTATGACC
dot-bracket secondary structure
((((((.(((....(((((((((.((((........(((.((((((((((.(((((.((((((((((.((((((((((((.((.(((.(((((((..(((
..((.((((........)))).))..)))..))))))).))).)).)))))))))))).)))))))))).))))).)))))))))).)))........))
)).))))).))))))).))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
CGTAAAGCAGGTGATTCACCAATTTAGGTTTACATCCACAGTGTGGAAGACACTGAAGGACCTAAACTAACAAAGGTAAACGGCTCAGTGTGCGGGGTAT
TACACTCGGTTTAATGTCTGAATGCGATAATCCGCACGATGATCTCTTTATCTTTGTTTGTTTAGGTCCCTTAGTTTCTTCTATACCGTGAATCCAATCC
TGTATTGGATGAGCTGGTTTATGACC
dot-bracket secondary structure
((((((.(((....(((((((((.((((........(((.((((((((((.(((((.((((((((((.((((((((((((.((.(((.(((((((..(((
..((.((((........)))).))..)))..))))))).))).)).)))))))))))).)))))))))).))))).)))))))))).)))........))
)).))))).))))))).))))))...
SIMILARITIES| miRBase aly-MIR840: 1e-79 PMRD ath-miR840: 8e-127 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miR840 from PMRD (MNEST047069) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
