ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR841
source: miRBase, original name: ath-MIR841 (MI0005397)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACGAGCCACTTGAAACTGAA miRNA* CAATTTCTAGTGGGTCGTATT mismatches: 3 bulges: 0 |
pre-miRNA
GCACCAACACTACTATGTGCAGAAACTCTGTTCTTAAGTTGCTTGTGAATACGAGCCACTTGAAACTGAAAGAAACAAAGAAACAATATCAGTATAAAAT
TTTATCAAATTATACTACAAAAAATGAAATTTCTTTGTTTATTTCAATTTCTAGTGGGTCGTATTCACATGCAACTCAAGACTAGAGTATCTACAACATG
GTCGACTTGGTG
dot-bracket secondary structure
.((((((..(.(((((((..(((.((((((.((((.((((((.(((((((((((.(((((.((((.(((((.(((((((((((.......(((((((...
.........))))))).((.....))...))))))))))).))))).)))).))))).))))))))))).)))))).)))).)))))).)))...)))))
)).)..))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
GCACCAACACTACTATGTGCAGAAACTCTGTTCTTAAGTTGCTTGTGAATACGAGCCACTTGAAACTGAAAGAAACAAAGAAACAATATCAGTATAAAAT
TTTATCAAATTATACTACAAAAAATGAAATTTCTTTGTTTATTTCAATTTCTAGTGGGTCGTATTCACATGCAACTCAAGACTAGAGTATCTACAACATG
GTCGACTTGGTG
dot-bracket secondary structure
.((((((..(.(((((((..(((.((((((.((((.((((((.(((((((((((.(((((.((((.(((((.(((((((((((.......(((((((...
.........))))))).((.....))...))))))))))).))))).)))).))))).))))))))))).)))))).)))).)))))).)))...)))))
)).)..))))))
SIMILARITIES| miRBase ath-MIR841b: 2e-99 PMRD ath-miR841: 2e-118 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10846-akr from PMRD (MNEST047946) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
