ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR844
source: miRBase, original name: ath-MIR844 (MI0005400)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGTAAGATTGCTTATAAGCT miRNA* CTTATAAGCCATCTTACTAGT mismatches: 1 bulges: 0 |
pre-miRNA
GGAAGGAGATGTTTGCAGTTGGTTTAATGAATCTTTTACATTGAAGAGAAGGAATGGTAAGATTGCTTATAAGCTGGATCTTGAGGGTGAGTGGTCTCTT
CTACGCATTGGGCTTATAAGCCATCTTACTAGTTCTTCTTTTCAATGTTGTCTAAGGACGCTGCTTTTATCAGGTGATCATTTGT
dot-bracket secondary structure
.......((((...(((((..((((...((.......((((((((((((((((.(((((((((.(((((((((((.(((....((((.(((....)))))
))....))).))))))))))).))))))))).))))))))))))))))..))...)))))))))...))))..............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
GGAAGGAGATGTTTGCAGTTGGTTTAATGAATCTTTTACATTGAAGAGAAGGAATGGTAAGATTGCTTATAAGCTGGATCTTGAGGGTGAGTGGTCTCTT
CTACGCATTGGGCTTATAAGCCATCTTACTAGTTCTTCTTTTCAATGTTGTCTAAGGACGCTGCTTTTATCAGGTGATCATTTGT
dot-bracket secondary structure
.......((((...(((((..((((...((.......((((((((((((((((.(((((((((.(((((((((((.(((....((((.(((....)))))
))....))).))))))))))).))))))))).))))))))))))))))..))...)))))))))...))))..............
SIMILARITIES| miRBase aly-MIR844: 3e-30 PMRD ath-miR844: 2e-102 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miR844 from PMRD (MNEST047073) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
