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ABOUT THIS RECORD

ID: MNEST040169
species: Arabidopsis thaliana
miRNA family: MIR845_1
source: miRBase, original name: ath-MIR845a (MI0005401)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CGGCTCTGATACCAATTGATG

miRNA*
TCGATTGCTGTCAGAGCCACG

mismatches: 2
bulges: 0

View larger
pre-miRNA
AGATAAGGGATTGCACGATTTCTCAATAGTTCCGTCGCTGCGTTTCCATCACGTCGATTGCTGTCAGAGCCACGCCTATGAAGAATTTGTGCGGCTCTGA
TACCAATTGATG
CTATGGAAACATCGATATTGCCTGATTCCGTGTTTCCTTTTACCTTGTTGT


dot-bracket secondary structure
....((((((..(((((...((.((((......((((....((((((((..(((((((((.((((((((((.(((..((.....))..))).))))))))
)).)))))))))
..))))))))..))))))))...))...))))).))))))...........



SIMILARITIES
miRBase aly-MIR845a: 1e-41

PMRD ath-miR845a: 2e-89

microPC no hits
UniProt no hits

RFAM MIR845_1: 1e-41

Identical with: ath-miR845a from PMRD (MNEST047075)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, cloned
deep sequencing data evidence

references

[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"




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