ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR845_1
source: miRBase, original name: ath-MIR845b (MI0005444)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTCTGATACCAAATTGATG miRNA* TCAATTGCTATCAGAGCAACG mismatches: 3 bulges: 1 |
pre-miRNA
AGTCGGTTTCCATCACGTCAATTGCTATCAGAGCAACGCATGATGTATAATAACTAAGCGTCGCTCTGATACCAAATTGATGCAATGGAAACATCGATT
dot-bracket secondary structure
(((((((((((((..((((((((..(((((((((.((((.....((......))...)))).)))))))))...))))))))..))))))))..)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned
deep sequencing data evidence
references
[1] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
AGTCGGTTTCCATCACGTCAATTGCTATCAGAGCAACGCATGATGTATAATAACTAAGCGTCGCTCTGATACCAAATTGATGCAATGGAAACATCGATT
dot-bracket secondary structure
(((((((((((((..((((((((..(((((((((.((((.....((......))...)))).)))))))))...))))))))..))))))))..)))))
SIMILARITIES| miRBase aly-MIR845b: 4e-34 PMRD ath-miR845b: 2e-51 microPC no hits | UniProt no hits RFAM MIR845_1: 2e-45 |
Identical with: ath-miR845b from PMRD (MNEST047076) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned
deep sequencing data evidence
references
[1] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
