ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR846
source: miRBase, original name: ath-MIR846 (MI0005402)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAATTGAAGTGCTTGAATT miRNA* TTCAAGGACTTCTATTCAGAA mismatches: 3 bulges: 0 |
pre-miRNA
CAAACATCTTGAATCCGTTGAGGTTGATCACGATGATGCCACATCCGGTTTCATTCAAGGACTTCTATTCAGAACAAACTTCATGATTTCTGAACTAATT
GGATATGATAAATGGTAACAAGTATTCACTTGCATTCAAGGGACAAAAAATCATTGGGATATATGATTATGACAAACACGATTGGAAGCTGAATGGTTGC
GGGAGGCAAGCAGTGGGATAATGATCTGCAAGTGGAAACTTCTTACTTTTATCATATCCCATCAGCTCGAAAGTCTTGATGTTAGTTTTGAATTGAAGTG
CTTGAATTACACCAGATTTATTGTGCTCGTGTATCCCGGTAAATTCGACTAATGACCAA
dot-bracket secondary structure
....(((.(((((((((..((...(((.((((((((......(((.(((.(.(((((((.(((((.(((((((((.(((.(((.(((((.(((.((.((.
((((((((((((.(((((.((((.(((((((((...............((((((........))))))...........(((((....((.(.((.((((
.....)))).)).).))....))))).))))))))).)))).))))))))))))))))).)).)).))).))))).))).))).))))))))).))))).
))))))).).))).))))))))))).)))....)).)))...))))))...))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned, Northern, Solexa
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[3] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[4] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
CAAACATCTTGAATCCGTTGAGGTTGATCACGATGATGCCACATCCGGTTTCATTCAAGGACTTCTATTCAGAACAAACTTCATGATTTCTGAACTAATT
GGATATGATAAATGGTAACAAGTATTCACTTGCATTCAAGGGACAAAAAATCATTGGGATATATGATTATGACAAACACGATTGGAAGCTGAATGGTTGC
GGGAGGCAAGCAGTGGGATAATGATCTGCAAGTGGAAACTTCTTACTTTTATCATATCCCATCAGCTCGAAAGTCTTGATGTTAGTTTTGAATTGAAGTG
CTTGAATTACACCAGATTTATTGTGCTCGTGTATCCCGGTAAATTCGACTAATGACCAA
dot-bracket secondary structure
....(((.(((((((((..((...(((.((((((((......(((.(((.(.(((((((.(((((.(((((((((.(((.(((.(((((.(((.((.((.
((((((((((((.(((((.((((.(((((((((...............((((((........))))))...........(((((....((.(.((.((((
.....)))).)).).))....))))).))))))))).)))).))))))))))))))))).)).)).))).))))).))).))).))))))))).))))).
))))))).).))).))))))))))).)))....)).)))...))))))...))).....
SIMILARITIES| miRBase aly-MIR846: 4e-105 PMRD ath-miR846: 0 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miR846 from PMRD (MNEST047077) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned, Northern, Solexa
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[3] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[4] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
