ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR847
source: miRBase, original name: ath-MIR847 (MI0005410)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCACTCCTCTTCTTCTTGATG miRNA* TCTTGATGAAGAGGAATGGGA mismatches: 5 bulges: 0 |
pre-miRNA
CATTTTCTTGTATTCAAAGTATCTTAAGTTAAGAAGAGAATAAGATTCTTACATCTTGATGAAGAGGAATGGGAAGCCGAAATCTAAACTGAAACAGAGG
CGTCACCCAATTATCAATTGGTAAGTGATATCTATGTTTCGATCTGTATCTCGGCCTTTCACTCCTCTTCTTCTTGATGTAAGAATTTGTTATTCGACAC
ATTAGATGGAGTGAAAAATCTGTTAGATAT
dot-bracket secondary structure
..((((((((...................))))))))((((((((((((((((((..((.((((((((.((..(.(((((.........(((((((.((.
.((((((((((.....)))))...)))))..)).))))))).........))))).)..)).)))))))).))..))))))))))))..)))))).....
(((.((((((.(....).)))))).)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
CATTTTCTTGTATTCAAAGTATCTTAAGTTAAGAAGAGAATAAGATTCTTACATCTTGATGAAGAGGAATGGGAAGCCGAAATCTAAACTGAAACAGAGG
CGTCACCCAATTATCAATTGGTAAGTGATATCTATGTTTCGATCTGTATCTCGGCCTTTCACTCCTCTTCTTCTTGATGTAAGAATTTGTTATTCGACAC
ATTAGATGGAGTGAAAAATCTGTTAGATAT
dot-bracket secondary structure
..((((((((...................))))))))((((((((((((((((((..((.((((((((.((..(.(((((.........(((((((.((.
.((((((((((.....)))))...)))))..)).))))))).........))))).)..)).)))))))).))..))))))))))))..)))))).....
(((.((((((.(....).)))))).)))..
SIMILARITIES| miRBase aly-MIR847: 4e-33 PMRD ath-miR847: 4e-129 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miR847 from PMRD (MNEST047078) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
