ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR848
source: miRBase, original name: ath-MIR848 (MI0005403)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACATGGGACTGCCTAAGCTA miRNA* GCTTGGCAATCTCATGTCAAA mismatches: 1 bulges: 1 |
pre-miRNA
AAAACTTTCAGATTGCACAAGAGAATATGAAAAAGTATTAACACAAGCCTTATAGCTTGGCAATCTCATGTCAAATAAGGAAAAGAAGAGGAACCCAAGG
TATGTTTCTCATCTACCTTCTTTGACATGGGACTGCCTAAGCTAAAGGCTTGCCATGTTATCACATCCTTCTTTCATTTCGTCGCAACCACTTTA
dot-bracket secondary structure
..........(.((((((.((((((...(((...((..(((((((((((((.((((((((((.((((((((((((.((((...(((.(((((((......
...))))))).))).)))).)))))))))))).)))).))))))))))))))...)))))..))....))).))).))).)).)))).)......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
AAAACTTTCAGATTGCACAAGAGAATATGAAAAAGTATTAACACAAGCCTTATAGCTTGGCAATCTCATGTCAAATAAGGAAAAGAAGAGGAACCCAAGG
TATGTTTCTCATCTACCTTCTTTGACATGGGACTGCCTAAGCTAAAGGCTTGCCATGTTATCACATCCTTCTTTCATTTCGTCGCAACCACTTTA
dot-bracket secondary structure
..........(.((((((.((((((...(((...((..(((((((((((((.((((((((((.((((((((((((.((((...(((.(((((((......
...))))))).))).)))).)))))))))))).)))).))))))))))))))...)))))..))....))).))).))).)).)))).)......
SIMILARITIES| miRBase aly-MIR848: 1e-32 PMRD ath-miR848: 2e-108 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miR848 from PMRD (MNEST047079) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
